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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13529875_13529922_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13529875 - 13529922
Intron Length:
48

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CGG|GCAGGGCCG
5'SS Class:
major
3'SS Sequence:
TCGCCCCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CAGCCAC
U12 Branch Point Sequence:
GCCCAGCCACCG
Flanking Amino Acid:
GGGGGGGQGRVAERLLHEHW
Intron Amino Acid Position:
116

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.5
0.53
1.2
58
40.9
Major BPS
42.9
-0.4
1.2
45.5
37.5
Major PPT
68.5
0.42
0.8
61.8
28.8
Minor 5ss
18.9
-3.6
3.9
21.6
37.3
Minor BPS
25.8
-1.9
2
23.26
35.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005875
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038127
13529341 - 13533838
4498