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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13529980_13530438_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
13529980 - 13530438
Intron Length:
459

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGCCG
5'SS Class:
strong_major
3'SS Sequence:
TCTCTGTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGCCAC
U12 Branch Point Sequence:
GCTGCTGGCACT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
0.9
63.1
43
Major BPS
47.4
-0.1
1.3
55.9
40.8
Major PPT
82.3
0.73
0.8
76.6
32
Minor 5ss
25.6
-2.8
3
30.2
43
Minor BPS
39
-0.7
2.4
56.55
46.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005875
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006095
13529748 - 13533838
4091