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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13530985_13531462_F

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
5UTR
Intron Coordinates:
13530985 - 13531462
Intron Length:
478

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAACCTTT
5'SS Class:
weak_major
3'SS Sequence:
CCACATATATTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CACATAT
U12 Branch Point Sequence:
TTTTTCCCACAT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1.1
78.8
38.3
Major BPS
54.1
0.1
1
50.6
35
Major PPT
57.9
0.18
1
55.9
38.2
Minor 5ss
68.6
0.63
2.3
82.3
37.5
Minor BPS
46.2
-0.2
2.2
73.99
42.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005875
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038302
13529341 - 13533838
4498
ENSAPLT00000038127
13529341 - 13533838
4498
ENSAPLT00000006095
13529748 - 13533838
4091