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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13531576_13531884_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
13531576 - 13531884
Intron Length:
309

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTATGGGAT
5'SS Class:
major
3'SS Sequence:
TTTCCTCCTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
GTGAGTTTAAAT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.2
0.55
1.1
65.7
40.1
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
87.5
0.84
0.6
85.4
21.9
Minor 5ss
36.5
-1.5
3.6
46
49.2
Minor BPS
49.2
0.02
1.9
66.54
44

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005875
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038302
13529341 - 13533838
4498
ENSAPLT00000038127
13529341 - 13533838
4498
ENSAPLT00000006095
13529748 - 13533838
4091