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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13532394_13532840_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13532394 - 13532840
Intron Length:
447

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
TCCTTGCCTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTTAG
U12 Branch Point Sequence:
TTAGAGACAATT
Flanking Amino Acid:
EREAELQTIFREEAKKVWEK
Intron Amino Acid Position:
24

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.9
1.04
0.7
89.2
17.6
Major BPS
50.9
0.02
1.4
49.4
37.6
Major PPT
75.9
0.58
0.8
73.5
31.6
Minor 5ss
38.3
-1.3
2.9
49
47.2
Minor BPS
37.7
-0.8
2.4
59.03
44

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005875
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038302
13529341 - 13533838
4498
ENSAPLT00000038127
13529341 - 13533838
4498
ENSAPLT00000006095
13529748 - 13533838
4091