About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13532923_13533129_F

Intron Information:

Intron Rank:
7
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
13532923 - 13533129
Intron Length:
207

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGATGCCT
5'SS Class:
major
3'SS Sequence:
TCACTTCACAAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TCTTGAC
U12 Branch Point Sequence:
GCTTTCTTGACT
Flanking Amino Acid:
KVARDRLMNEVLAGRQRQIQ
Intron Amino Acid Position:
52

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.4
0.58
1
65
40.5
Major BPS
73.9
0.59
1
65.3
41.6
Major PPT
58.8
0.2
1.1
59.7
34.7
Minor 5ss
28
-2.5
3.2
39.9
45.7
Minor BPS
76
0.9
1.1
83.36
37.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005875
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038302
13529341 - 13533838
4498
ENSAPLT00000038127
13529341 - 13533838
4498
ENSAPLT00000006095
13529748 - 13533838
4091