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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13533316_13533658_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13533316 - 13533658
Intron Length:
343

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTGTTT
5'SS Class:
major
3'SS Sequence:
TTCCTCTGCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGTAAC
U12 Branch Point Sequence:
TGAGCTGTAACC
Flanking Amino Acid:
TARRQELEAQVTERRLQEQE
Intron Amino Acid Position:
114

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.5
0.58
1
74.1
36.8
Major BPS
62.2
0.3
1.2
65
38.7
Major PPT
76.9
0.61
0.9
76.2
32.3
Minor 5ss
48.8
-0.1
3.1
73.2
43.6
Minor BPS
49.7
-0
2.1
63.51
42.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005875
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038302
13529341 - 13533838
4498
ENSAPLT00000038127
13529341 - 13533838
4498
ENSAPLT00000006095
13529748 - 13533838
4091