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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13538947_13542000_R

Intron Information:

Intron Rank:
19
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
13538947 - 13542000
Intron Length:
3054

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTACTCTGG
5'SS Class:
weak_major
3'SS Sequence:
CCTCTTTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATACAT
U12 Branch Point Sequence:
GTCTCCACACAA
Flanking Amino Acid:
LTIQQPGPASCYIPCSERIH
Intron Amino Acid Position:
708

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
59.4
0.22
1.2
46.3
44.4
Major BPS
66.1
0.4
1
73
31.5
Major PPT
87.9
0.85
0.7
83.3
25
Minor 5ss
42.4
-0.8
3.1
53.3
45.7
Minor BPS
42.6
-0.5
2.1
54.85
43.3

Associated Gene:

Gene:
GIT2
Ensembl Gene ID:
ENSAPLG00000006006
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032351
13536947 - 13561827
24881
ENSAPLT00000044135
13536947 - 13561107
24161
ENSAPLT00000040483
13537938 - 13561827
23890