Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13542127_13543797_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

13542127 - 13543797

Intron Length:

1671

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGGCGT

5'SS Class:

strong_major

3'SS Sequence:

CCTGGCCGAGCAG|A

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TGCTCAC

U12 Branch Point Sequence:

CTGTGCTCACCT

Flanking Amino Acid:

LRAAQENKHDRPLERASMLK

Intron Amino Acid Position:

666

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.2

0.9

73.4

43.3

Major BPS

69.8

0.49

1.1

71.3

36.7

Major PPT

56.9

0.16

1.1

50.9

Minor 5ss

32.5

-2

3.4

47.7

47.8

Minor BPS

46.8

-0.1

2.2

67.53

Associated Gene:

Gene:

GIT2

Ensembl Gene ID:

ENSAPLG00000006006

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000044135

13536947 - 13561107

24161

ENSAPLT00000040483

13537938 - 13561827

23890

ENSAPLT00000032351

13536947 - 13561827

24881