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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13544153_13546542_R

Intron Information:

Intron Rank:
16
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
13544153 - 13546542
Intron Length:
2390

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTTAAGTAC
5'SS Class:
weak_major
3'SS Sequence:
GTATTTCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
CAATGCTGAAAT
Flanking Amino Acid:
SWSRDESTRRASKLEKQSSV
Intron Amino Acid Position:
578

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
58.9
0.21
1.2
55.4
38.5
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
83
0.74
0.9
77.4
36.6
Minor 5ss
32.3
-2
3.2
33.8
42
Minor BPS
48
-0
2
64.52
45

Associated Gene:

Gene:
GIT2
Ensembl Gene ID:
ENSAPLG00000006006
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040483
13537938 - 13561827
23890
ENSAPLT00000032351
13536947 - 13561827
24881
ENSAPLT00000017606
13536947 - 13561107
24161