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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13548135_13550814_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13548135 - 13550814
Intron Length:
2680

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAAGC
5'SS Class:
strong_major
3'SS Sequence:
ACATTTCTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAAACAT
U12 Branch Point Sequence:
CACTGCTAAACA
Flanking Amino Acid:
SDELRVMQKKLQTLQSENTN
Intron Amino Acid Position:
465

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.9
0.96
0.8
79
35.3
Major BPS
63.2
0.33
1.1
69.6
35.7
Major PPT
80.6
0.69
0.9
77.6
35.9
Minor 5ss
33.8
-1.8
2.9
43.7
43.6
Minor BPS
48.9
-0
2.1
59.73
46.2

Associated Gene:

Gene:
GIT2
Ensembl Gene ID:
ENSAPLG00000006006
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044135
13536947 - 13561107
24161
ENSAPLT00000032351
13536947 - 13561827
24881
ENSAPLT00000017606
13536947 - 13561107
24161