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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13551854_13552678_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13551854 - 13552678
Intron Length:
825

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TTTTGATTAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTGATTAACA
Flanking Amino Acid:
QQGNPVSGSKENVELILKSI
Intron Amino Acid Position:
367

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.7
1.1
0.7
87.9
29.3
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
78.8
0.65
1
74.2
39.4
Minor 5ss
43.8
-0.7
2.8
57.8
46.8
Minor BPS
68.3
0.57
2
84.69
35.1

Associated Gene:

Gene:
GIT2
Ensembl Gene ID:
ENSAPLG00000006006
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032351
13536947 - 13561827
24881
ENSAPLT00000017606
13536947 - 13561107
24161
ENSAPLT00000006333
13537938 - 13561107
23170
ENSAPLT00000044135
13536947 - 13561107
24161
ENSAPLT00000040483
13537938 - 13561827
23890