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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13553177_13553382_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13553177 - 13553382
Intron Length:
206

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAATGAG
5'SS Class:
strong_major
3'SS Sequence:
CTTCCCTGAGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
TCTTCCCTGAGC
Flanking Amino Acid:
DEVDRRETDAVWLATQNHST
Intron Amino Acid Position:
297

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
0.9
70.8
35
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
69.5
0.44
1
66
34.4
Minor 5ss
25.9
-2.8
3
30.5
43.3
Minor BPS
55.5
0.15
2
70.49
41.3

Associated Gene:

Gene:
GIT2
Ensembl Gene ID:
ENSAPLG00000006006
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040483
13537938 - 13561827
23890
ENSAPLT00000032351
13536947 - 13561827
24881
ENSAPLT00000017606
13536947 - 13561107
24161
ENSAPLT00000006333
13537938 - 13561107
23170
ENSAPLT00000044135
13536947 - 13561107
24161