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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13556718_13556866_R

Intron Information:

Intron Rank:
5
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
13556718 - 13556866
Intron Length:
149

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCC|GTATGAACG
5'SS Class:
weak_major
3'SS Sequence:
TAATAACTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
TTTTTCTTAATA
Flanking Amino Acid:
LGAQANFFHPEKGNTPLHVA
Intron Amino Acid Position:
165

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
56.5
0.15
1.3
53
43.9
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
71.4
0.48
1
63.5
42.3
Minor 5ss
41.7
-0.9
2.8
54.8
42.3
Minor BPS
87.5
1.17
0.8
90.77
23.3

Associated Gene:

Gene:
GIT2
Ensembl Gene ID:
ENSAPLG00000006006
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032351
13536947 - 13561827
24881
ENSAPLT00000017606
13536947 - 13561107
24161
ENSAPLT00000006333
13537938 - 13561107
23170
ENSAPLT00000044135
13536947 - 13561107
24161
ENSAPLT00000040483
13537938 - 13561827
23890