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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13556954_13557292_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13556954 - 13557292
Intron Length:
339

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTAGTATT
5'SS Class:
strong_major
3'SS Sequence:
GTTTCTTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAG
U12 Branch Point Sequence:
CCTGTGTTAAGT
Flanking Amino Acid:
DSVTAKDLSKQLHSSVRTGN
Intron Amino Acid Position:
136

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
1
92
25
Major BPS
60.4
0.26
1.6
69.7
44.2
Major PPT
90.3
0.91
0.7
88.4
28.7
Minor 5ss
38
-1.4
2.8
51.9
44.6
Minor BPS
45
-0.3
2.4
61.99
48.4

Associated Gene:

Gene:
GIT2
Ensembl Gene ID:
ENSAPLG00000006006
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032351
13536947 - 13561827
24881
ENSAPLT00000017606
13536947 - 13561107
24161
ENSAPLT00000006333
13537938 - 13561107
23170
ENSAPLT00000044135
13536947 - 13561107
24161
ENSAPLT00000040483
13537938 - 13561827
23890