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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13557399_13557760_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13557399 - 13557760
Intron Length:
362

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTAAGTGGA
5'SS Class:
major
3'SS Sequence:
TTTCTCCTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCTT
U12 Branch Point Sequence:
TTTTCTTTCGGT
Flanking Amino Acid:
RRKANPQDKVHPNKAEFIRA
Intron Amino Acid Position:
100

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.3
0.6
1
66.5
39.5
Major BPS
39.5
-0.6
4.3
85.7
34.9
Major PPT
90
0.9
0.6
85
22.5
Minor 5ss
34.2
-1.8
3.2
45.7
43.5
Minor BPS
42.6
-0.4
3.7
79.24
43.5

Associated Gene:

Gene:
GIT2
Ensembl Gene ID:
ENSAPLG00000006006
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006333
13537938 - 13561107
23170
ENSAPLT00000044135
13536947 - 13561107
24161
ENSAPLT00000040483
13537938 - 13561827
23890
ENSAPLT00000032351
13536947 - 13561827
24881
ENSAPLT00000017606
13536947 - 13561107
24161