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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13566040_13567052_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13566040 - 13567052
Intron Length:
1013

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGATAC
5'SS Class:
strong_major
3'SS Sequence:
CACTTTTTGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAC
U12 Branch Point Sequence:
TGGTATTCACTT
Flanking Amino Acid:
CLDTKNIAFERTTTGFWVWR
Intron Amino Acid Position:
244

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.7
0.98
0.8
81.2
26.3
Major BPS
82.3
0.8
0.8
83.6
25.8
Major PPT
75.1
0.56
1
72.2
37.5
Minor 5ss
38.2
-1.3
3.1
49.9
46.6
Minor BPS
45
-0.3
1.9
61.51
42.9

Associated Gene:

Gene:
ANKRD13A
Ensembl Gene ID:
ENSAPLG00000007138
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007446
13561848 - 13572966
11119