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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13567120_13568483_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13567120 - 13568483
Intron Length:
1364

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGCCT
5'SS Class:
major
3'SS Sequence:
TTTATTTTTAAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TTATTTTTAAAG
Flanking Amino Acid:
AEGVNGYEAKVYIANNVNVV
Intron Amino Acid Position:
267

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
69.4
41.1
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
80.8
0.69
1
82.3
33.1
Minor 5ss
32.7
-2
3.4
48.4
47.3
Minor BPS
66.8
0.39
1.4
68.96
38.4

Associated Gene:

Gene:
ANKRD13A
Ensembl Gene ID:
ENSAPLG00000007138
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007446
13561848 - 13572966
11119