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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13569361_13569904_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13569361 - 13569904
Intron Length:
544

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTCTT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCCTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTCTAT
U12 Branch Point Sequence:
TGCTACTTCAGT
Flanking Amino Acid:
GTVEHEYGAQSTVKTTEYAA
Intron Amino Acid Position:
314

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.7
86.9
30.1
Major BPS
65
0.37
1.3
64.5
42.5
Major PPT
88.9
0.88
0.7
81.1
31
Minor 5ss
34.7
-1.7
3.1
49.5
46.7
Minor BPS
48.1
-0
2.2
69.33
47.1

Associated Gene:

Gene:
ANKRD13A
Ensembl Gene ID:
ENSAPLG00000007138
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007446
13561848 - 13572966
11119