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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13571957_13572767_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13571957 - 13572767
Intron Length:
811

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAACTATT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTCCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTGAA
U12 Branch Point Sequence:
TCTACTTGAATT
Flanking Amino Acid:
YSQDFNIQYQRALQESYLTS
Intron Amino Acid Position:
521

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
1
90.9
28.7
Major BPS
65.8
0.39
1
57.3
39.4
Major PPT
88.9
0.88
0.6
88.5
21
Minor 5ss
47.2
-0.3
2.7
68.8
41.8
Minor BPS
63.8
0.51
1.5
77.29
39.6

Associated Gene:

Gene:
ANKRD13A
Ensembl Gene ID:
ENSAPLG00000007138
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007446
13561848 - 13572966
11119