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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13578306_13578962_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13578306 - 13578962
Intron Length:
657

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGAGTACC
5'SS Class:
strong_major
3'SS Sequence:
TTGGCTGTTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCATCAC
U12 Branch Point Sequence:
CACTCCCGAATA
Flanking Amino Acid:
WAAISPALLAFIVVSSLLEQ
Intron Amino Acid Position:
699

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
75.3
34.6
Major BPS
49.2
-0
1.3
53.6
41.6
Major PPT
75.4
0.57
1
69.1
41.8
Minor 5ss
32
-2.1
2.6
39.1
38.9
Minor BPS
48.7
-0.1
1.8
58.08
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007491
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007837
13577871 - 13584264
6394