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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13579064_13579259_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13579064 - 13579259
Intron Length:
196

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGAGCC
5'SS Class:
major
3'SS Sequence:
CATCCTCCGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTCCAT
U12 Branch Point Sequence:
CTCGCTGCAACC
Flanking Amino Acid:
LETIAVSWFYGIQRFSHDVK
Intron Amino Acid Position:
665

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
0.9
64.8
33.2
Major BPS
64.7
0.37
1.3
74.7
40
Major PPT
66.7
0.38
1
62
34.4
Minor 5ss
26.4
-2.7
3.2
31
36.4
Minor BPS
43.3
-0.5
2.2
53.34
45

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007491
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007837
13577871 - 13584264
6394