Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13579613_13579706_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

13579613 - 13579706

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACG|GTATGACAC

5'SS Class:

major

3'SS Sequence:

TTCCCCGGGGCAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTCTCAT

U12 Branch Point Sequence:

CCCGCCTCACCC

Flanking Amino Acid:

MMITLGLDSTFGGLEAVITA

Intron Amino Acid Position:

588

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.3

0.53

1.1

40.1

Major BPS

77.2

0.67

1.2

79.6

35.6

Major PPT

60.6

0.24

1.1

57.1

38.6

Minor 5ss

38.8

-1.3

3.1

51.7

45.1

Minor BPS

-0.4

1.9

49.59

47.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000007491

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000007837

13577871 - 13584264

6394