About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13579820_13580016_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13579820 - 13580016
Intron Length:
197

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTTGCCTC
5'SS Class:
major
3'SS Sequence:
CCTCCCCTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAAACAA
U12 Branch Point Sequence:
AAAGGCAAAACA
Flanking Amino Acid:
VEVEDVARDKGPSLLFITYP
Intron Amino Acid Position:
550

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.5
0.44
1.2
60.9
43.8
Major BPS
48.1
-0.1
0.9
53.4
30.8
Major PPT
69.9
0.45
0.7
61.4
29
Minor 5ss
44.9
-0.5
2.8
59.9
44.8
Minor BPS
39.9
-0.7
2.2
48.67
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007491
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007837
13577871 - 13584264
6394