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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13580145_13580312_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13580145 - 13580312
Intron Length:
168

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGCACC
5'SS Class:
major
3'SS Sequence:
TTCTGCCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGGATAT
U12 Branch Point Sequence:
TGCTGCAGGATA
Flanking Amino Acid:
SYNHFHNNCYRDALVTSAVN
Intron Amino Acid Position:
507

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1
66.2
39.6
Major BPS
46.1
-0.2
1.2
38.5
41.4
Major PPT
82.3
0.73
0.8
73.3
37.2
Minor 5ss
35.7
-1.6
2.9
45.4
42.5
Minor BPS
41.8
-0.6
2
52.53
39.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007491
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007837
13577871 - 13584264
6394