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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13580417_13580918_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13580417 - 13580918
Intron Length:
502

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCCTGCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTGTCAT
U12 Branch Point Sequence:
CTGGCCTCCAGC
Flanking Amino Acid:
PDWGKLLSTAVWVDAAAQIF
Intron Amino Acid Position:
473

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
77.9
32.7
Major BPS
67.1
0.42
1.4
71.4
45.1
Major PPT
79.4
0.66
0.9
73.6
36.9
Minor 5ss
37.9
-1.4
2.9
51.5
44.9
Minor BPS
41.5
-0.6
2.2
49.56
47

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007491
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007837
13577871 - 13584264
6394