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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13581348_13581564_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13581348 - 13581564
Intron Length:
217

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAC|GTAAGTGCG
5'SS Class:
major
3'SS Sequence:
TGCCCGGCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACCTGAG
U12 Branch Point Sequence:
AGCACCTGAGCC
Flanking Amino Acid:
SSRSPAEEFYTRKVLEIQKS
Intron Amino Acid Position:
381

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1.3
69.7
41.3
Major BPS
48.4
-0.1
1.5
45
39.9
Major PPT
60.9
0.25
1
53.2
36.6
Minor 5ss
34.4
-1.8
3.1
40.9
38.5
Minor BPS
48
-0.1
1.7
55.75
41.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007491
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007837
13577871 - 13584264
6394