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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13581785_13581871_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13581785 - 13581871
Intron Length:
87

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAGGT
5'SS Class:
strong_major
3'SS Sequence:
CCTCTCTCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCGGGAT
U12 Branch Point Sequence:
GCATCGGGATCC
Flanking Amino Acid:
IWRRICPIFKGIGFAICIIG
Intron Amino Acid Position:
308

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.5
0.86
0.8
75
35.2
Major BPS
47.5
-0.1
1.5
45
47.8
Major PPT
76.9
0.6
0.7
68.7
31.7
Minor 5ss
26.7
-2.7
3.3
38.5
46.6
Minor BPS
35
-1.1
2.5
44.51
43.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007491
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007837
13577871 - 13584264
6394