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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13599453_13605063_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13599453 - 13605063
Intron Length:
5611

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGAGTCTC
5'SS Class:
strong_major
3'SS Sequence:
TGCTTTGTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTCAG
U12 Branch Point Sequence:
ACTTCAGTAACA
Flanking Amino Acid:
EDSSHIISFCAAVEACVLYG
Intron Amino Acid Position:
82

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
0.9
72.6
38.9
Major BPS
54.6
0.12
1.5
65.3
41.5
Major PPT
81.5
0.71
0.9
76.2
37.8
Minor 5ss
33.8
-1.8
3
45.5
42.6
Minor BPS
53.5
0.11
2.3
70.86
41.2

Associated Gene:

Gene:
SGSM1
Ensembl Gene ID:
ENSAPLG00000009722
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035237
13590179 - 13622123
31945
ENSAPLT00000023731
13590179 - 13622123
31945
ENSAPLT00000010145
13590179 - 13622123
31945