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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13605227_13606008_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13605227 - 13606008
Intron Length:
782

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGC|GTAAGGCAC
5'SS Class:
major
3'SS Sequence:
TTTACCTCTAAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAC
U12 Branch Point Sequence:
TTGCCTTTTACC
Flanking Amino Acid:
VQDLEQLIENARNQVQSIPE
Intron Amino Acid Position:
136

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
61.9
0.28
1.4
54.9
44.4
Major BPS
74.2
0.6
1
67
39.4
Major PPT
71.9
0.49
1
71.7
33.1
Minor 5ss
32
-2.1
3.3
37.3
40.6
Minor BPS
62.6
0.38
1.6
72
39.3

Associated Gene:

Gene:
SGSM1
Ensembl Gene ID:
ENSAPLG00000009722
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035237
13590179 - 13622123
31945
ENSAPLT00000023731
13590179 - 13622123
31945
ENSAPLT00000010145
13590179 - 13622123
31945