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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13606749_13607224_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13606749 - 13607224
Intron Length:
476

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAACGCGT
5'SS Class:
major
3'SS Sequence:
CCTCTCTGTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTCAC
U12 Branch Point Sequence:
CCGTGCTCACTG
Flanking Amino Acid:
VDGPILASLLVGPCALEYTK
Intron Amino Acid Position:
210

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65
0.35
1.3
55.2
49
Major BPS
69.8
0.49
1.1
71.3
36.7
Major PPT
77
0.61
0.9
72
32.5
Minor 5ss
37.6
-1.4
3.4
47.7
47.8
Minor BPS
39.6
-0.9
2.1
38.28
45.5

Associated Gene:

Gene:
SGSM1
Ensembl Gene ID:
ENSAPLG00000009722
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035237
13590179 - 13622123
31945
ENSAPLT00000023731
13590179 - 13622123
31945
ENSAPLT00000010145
13590179 - 13622123
31945