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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13607985_13608130_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13607985 - 13608130
Intron Length:
146

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGTACC
5'SS Class:
major
3'SS Sequence:
TTATTTCCTAAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCTTTAT
U12 Branch Point Sequence:
CTCTCCTCACCT
Flanking Amino Acid:
YGKNNVLVQPRDDMEAIPGY
Intron Amino Acid Position:
303

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.1
0.64
1
72.9
36.6
Major BPS
71.5
0.54
1.1
63.3
42.8
Major PPT
74.8
0.56
1
75.8
33
Minor 5ss
39.2
-1.2
2.7
53
37.4
Minor BPS
57.9
0.33
1.9
75.75
46.8

Associated Gene:

Gene:
SGSM1
Ensembl Gene ID:
ENSAPLG00000009722
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023731
13590179 - 13622123
31945
ENSAPLT00000010145
13590179 - 13622123
31945
ENSAPLT00000035237
13590179 - 13622123
31945