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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13610940_13612017_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13610940 - 13612017
Intron Length:
1078

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TCTGTGTCTCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTCAT
U12 Branch Point Sequence:
GTGCCCTTGTCC
Flanking Amino Acid:
IIYPGTQSEFVTINGNFHPF
Intron Amino Acid Position:
486

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.87
0.9
76.5
39.2
Major BPS
79.8
0.74
0.9
81.3
29.9
Major PPT
74.3
0.55
0.9
65.9
40.9
Minor 5ss
36.8
-1.5
3.3
50
46.2
Minor BPS
44.2
-0.4
3.4
64.09
41.7

Associated Gene:

Gene:
SGSM1
Ensembl Gene ID:
ENSAPLG00000009722
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035237
13590179 - 13622123
31945