About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13610940_13613110_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13610940 - 13613110
Intron Length:
2171

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TGCCCTCTTACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGCTGAT
U12 Branch Point Sequence:
TGCCCTCTTACA
Flanking Amino Acid:
IIYPGTQSEFVPQDLMDAQG
Intron Amino Acid Position:
465

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.87
0.9
76.5
39.2
Major BPS
58.4
0.21
1.4
51.1
46.3
Major PPT
78.8
0.65
0.8
71.9
32.7
Minor 5ss
36.8
-1.5
3.3
50
46.2
Minor BPS
46.5
-0.2
1.9
58.41
40.7

Associated Gene:

Gene:
SGSM1
Ensembl Gene ID:
ENSAPLG00000009722
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023731
13590179 - 13622123
31945
ENSAPLT00000010145
13590179 - 13622123
31945