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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13613250_13613607_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13613250 - 13613607
Intron Length:
358

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGACAG
5'SS Class:
major
3'SS Sequence:
TTTTTATTGGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TGTGTTTTTATT
Flanking Amino Acid:
GGPSNGCSHERAPLKLLCDN
Intron Amino Acid Position:
511

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
62.7
43.6
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
83.6
0.76
0.9
81.4
35.2
Minor 5ss
30.2
-2.3
3.2
38.4
46.6
Minor BPS
52.4
0.16
1.7
71.3
40.2

Associated Gene:

Gene:
SGSM1
Ensembl Gene ID:
ENSAPLG00000009722
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035237
13590179 - 13622123
31945
ENSAPLT00000023731
13590179 - 13622123
31945
ENSAPLT00000010145
13590179 - 13622123
31945