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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13614657_13615097_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13614657 - 13615097
Intron Length:
441

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTCGGTATG
5'SS Class:
major
3'SS Sequence:
CTCACCGTCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTCAA
U12 Branch Point Sequence:
TGTGTCTCACCG
Flanking Amino Acid:
FGMTEAERKEADDQIRTCYE
Intron Amino Acid Position:
625

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.7
0.53
1.3
72.7
44.5
Major BPS
70.6
0.51
1.1
71.6
36.4
Major PPT
67.5
0.39
0.9
60.6
35
Minor 5ss
33.4
-1.9
3
42
44.7
Minor BPS
46.9
-0.3
2
55.64
45.7

Associated Gene:

Gene:
SGSM1
Ensembl Gene ID:
ENSAPLG00000009722
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035237
13590179 - 13622123
31945
ENSAPLT00000023731
13590179 - 13622123
31945
ENSAPLT00000010145
13590179 - 13622123
31945