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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13615281_13617055_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13615281 - 13617055
Intron Length:
1775

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGGTG
5'SS Class:
strong_major
3'SS Sequence:
CTCTCTCTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAG
U12 Branch Point Sequence:
TGCCTTTTCAGT
Flanking Amino Acid:
MHRDSTISNESSQSCSSGRQ
Intron Amino Acid Position:
686

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
0.9
73
38.2
Major BPS
76
0.65
1.5
85.7
34.9
Major PPT
85.4
0.8
0.7
80.1
25.2
Minor 5ss
27.4
-2.6
3.5
36.8
47.7
Minor BPS
45.1
-0.3
2
60.79
43.5

Associated Gene:

Gene:
SGSM1
Ensembl Gene ID:
ENSAPLG00000009722
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035237
13590179 - 13622123
31945
ENSAPLT00000023731
13590179 - 13622123
31945
ENSAPLT00000010145
13590179 - 13622123
31945