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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13617128_13617899_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13617128 - 13617899
Intron Length:
772

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCGGC
5'SS Class:
strong_major
3'SS Sequence:
TTGCCCTGCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAC
U12 Branch Point Sequence:
CTCGCTCTGACG
Flanking Amino Acid:
LQSDSSSSTQVFESVDEVEQ
Intron Amino Acid Position:
710

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
0.9
66.6
39.6
Major BPS
69.1
0.47
1
60.7
37.6
Major PPT
69.9
0.45
1
65.1
36.2
Minor 5ss
31.2
-2.1
3.3
41.1
45.6
Minor BPS
46.3
-0.4
1.8
50.42
44.4

Associated Gene:

Gene:
SGSM1
Ensembl Gene ID:
ENSAPLG00000009722
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023731
13590179 - 13622123
31945
ENSAPLT00000010145
13590179 - 13622123
31945
ENSAPLT00000035237
13590179 - 13622123
31945