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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13618794_13620018_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13618794 - 13620018
Intron Length:
1225

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGAGCC
5'SS Class:
major
3'SS Sequence:
CCCTCCTTCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGCTCAT
U12 Branch Point Sequence:
CCCTCCTTCACA
Flanking Amino Acid:
NLEKLRNIMCSYIWQHIEIG
Intron Amino Acid Position:
946

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1
63.2
36.7
Major BPS
62
0.3
1.3
65.3
43.7
Major PPT
76.8
0.6
0.7
70.8
27.2
Minor 5ss
24.9
-2.9
3.3
32.9
42.4
Minor BPS
61.9
0.37
1.8
66.36
46.4

Associated Gene:

Gene:
SGSM1
Ensembl Gene ID:
ENSAPLG00000009722
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035237
13590179 - 13622123
31945
ENSAPLT00000023731
13590179 - 13622123
31945
ENSAPLT00000010145
13590179 - 13622123
31945