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Intron Name: Anas_platyrhynchos_platyrhynchos_16_13620102_13620353_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

13620102 - 13620353

Intron Length:

252

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTGAGTGGG

5'SS Class:

strong_major

3'SS Sequence:

GTTCCCCTTGCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AGAGCAC

U12 Branch Point Sequence:

CAGAGCACGACT

Flanking Amino Acid:

LAPLLVILDDEALAFSCFTE

Intron Amino Acid Position:

974

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.1

0.73

0.9

64.9

41.1

Major BPS

41.9

-0.5

1.3

43.2

39.2

Major PPT

80.4

0.68

0.8

73.5

31.4

Minor 5ss

26.8

-2.7

28.2

38.6

Minor BPS

38.2

-0.8

2.1

49.92

43.6

Associated Gene:

Gene:

SGSM1

Ensembl Gene ID:

ENSAPLG00000009722

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000023731

13590179 - 13622123

31945

ENSAPLT00000010145

13590179 - 13622123

31945

ENSAPLT00000035237

13590179 - 13622123

31945