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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13620464_13620732_F

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13620464 - 13620732
Intron Length:
269

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGCGC
5'SS Class:
major
3'SS Sequence:
CTTTTCTTGGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTGAT
U12 Branch Point Sequence:
TGTGCTCTGATG
Flanking Amino Acid:
HFANMRSLIQILDSELFELM
Intron Amino Acid Position:
1011

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.63
1.1
60.9
40.7
Major BPS
79
0.72
1
69
38.9
Major PPT
82.7
0.74
0.9
80.4
31.5
Minor 5ss
29.7
-2.3
3.5
41.4
45.3
Minor BPS
47.6
-0.3
1.8
55.42
40.5

Associated Gene:

Gene:
SGSM1
Ensembl Gene ID:
ENSAPLG00000009722
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010145
13590179 - 13622123
31945
ENSAPLT00000035237
13590179 - 13622123
31945
ENSAPLT00000023731
13590179 - 13622123
31945