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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13620830_13621249_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13620830 - 13621249
Intron Length:
420

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGTGTGCA
5'SS Class:
strong_major
3'SS Sequence:
CCTCCCTTAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CAGTGAC
U12 Branch Point Sequence:
CCTCCCTTAACA
Flanking Amino Acid:
YRWFLLDFKRELVYDDVFAV
Intron Amino Acid Position:
1043

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
0.9
72.9
31.4
Major BPS
51.2
0.03
1.2
44.4
38.7
Major PPT
73.7
0.53
0.9
68.6
30.2
Minor 5ss
33.6
-1.9
3
41.1
45.4
Minor BPS
76.6
0.83
1.3
76.69
40.5

Associated Gene:

Gene:
SGSM1
Ensembl Gene ID:
ENSAPLG00000009722
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035237
13590179 - 13622123
31945
ENSAPLT00000023731
13590179 - 13622123
31945
ENSAPLT00000010145
13590179 - 13622123
31945