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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13621418_13621898_F

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13621418 - 13621898
Intron Length:
481

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTACGGCTT
5'SS Class:
major
3'SS Sequence:
GTCTGTGTTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CAGGTAT
U12 Branch Point Sequence:
GGCTCCTTCTGT
Flanking Amino Acid:
DFTDIIKFFNEMAERHNTKQ
Intron Amino Acid Position:
1099

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.4
0.55
1.1
66.3
44.7
Major BPS
44.6
-0.3
1.4
38.8
41.4
Major PPT
74.4
0.55
1
64.8
45.7
Minor 5ss
35.8
-1.6
3.7
52.7
46.4
Minor BPS
36.9
-0.9
3.6
60.96
48.3

Associated Gene:

Gene:
SGSM1
Ensembl Gene ID:
ENSAPLG00000009722
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010145
13590179 - 13622123
31945
ENSAPLT00000035237
13590179 - 13622123
31945
ENSAPLT00000023731
13590179 - 13622123
31945