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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13656126_13657496_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13656126 - 13657496
Intron Length:
1371

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTTTC
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTCTCTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TGCATTTTAACT
Flanking Amino Acid:
SRPLSADLTKMFSSPTSSSE
Intron Amino Acid Position:
535

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
1
84.3
27.2
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
84.9
0.78
0.6
84.8
22.8
Minor 5ss
47.2
-0.3
2.8
66.2
38.1
Minor BPS
67.4
0.63
1.3
76.69
40.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018339
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033443
13653804 - 13662370
8567