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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13657591_13659464_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13657591 - 13659464
Intron Length:
1874

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTGTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTTAA
U12 Branch Point Sequence:
ACAATCTTAACT
Flanking Amino Acid:
SANEAQEHQKTKEITLAHSI
Intron Amino Acid Position:
567

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
79.7
27.9
Major BPS
73.4
0.58
0.9
63.7
35.1
Major PPT
87.8
0.85
0.8
80.5
37
Minor 5ss
34.5
-1.8
3
40.8
39.4
Minor BPS
68.9
0.67
1.3
75.73
40.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018339
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033443
13653804 - 13662370
8567