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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_1367047_1430443_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1367047 - 1430443
Intron Length:
63397

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTAAG
5'SS Class:
strong_major
3'SS Sequence:
CTTTGATATATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
TTTCCTTTGATA
Flanking Amino Acid:
LHSESCFWSQNSEYINSGTN
Intron Amino Acid Position:
50

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
80.7
33.7
Major BPS
84.4
0.85
1
84
34.5
Major PPT
71.8
0.49
0.9
66.1
39.1
Minor 5ss
36.8
-1.5
2.7
42.7
38.3
Minor BPS
73.2
0.72
1.1
79.54
29.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012171
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034307
1144737 - 1430941
286205