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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13699803_13703762_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13699803 - 13703762
Intron Length:
3960

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGAGA
5'SS Class:
strong_major
3'SS Sequence:
TCTTAATTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
GTTTTCTTAATT
Flanking Amino Acid:
TWNEQRHSGDSFVPESPSSE
Intron Amino Acid Position:
135

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
78.7
37.2
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
83.4
0.75
0.8
77.4
35.5
Minor 5ss
31.6
-2.1
3.1
40
45.7
Minor BPS
84.3
1.15
0.9
92.31
29.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018309
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039479
13667395 - 13711643
44249
ENSAPLT00000035420
13689407 - 13711643
22237
ENSAPLT00000029878
13697980 - 13711643
13664
ENSAPLT00000018171
13682422 - 13711643
29222
ENSAPLT00000040372
13662771 - 13711643
48873