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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13706240_13707611_F

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
13706240 - 13707611
Intron Length:
1372

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGCTC
5'SS Class:
strong_major
3'SS Sequence:
AACAATTGATTAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTTTTTTTAACA
Flanking Amino Acid:
DNTWMFKDSTEEKKTMQQED
Intron Amino Acid Position:
279

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1
69.5
41.1
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
50.5
0.01
1.1
48.3
43.7
Minor 5ss
41.4
-1
3.3
58.6
46.2
Minor BPS
86.3
1.14
0.8
90.59
23.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018309
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035420
13689407 - 13711643
22237
ENSAPLT00000029878
13697980 - 13711643
13664
ENSAPLT00000018171
13682422 - 13711643
29222
ENSAPLT00000040372
13662771 - 13711643
48873
ENSAPLT00000039479
13667395 - 13711643
44249