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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13708504_13709033_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
3UTR
Intron Coordinates:
13708504 - 13709033
Intron Length:
530

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACCTTCT
5'SS Class:
major
3'SS Sequence:
TCTTTCTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTCAG
U12 Branch Point Sequence:
GTTACTTCAGCA
Flanking Amino Acid:
3UTR
Intron Amino Acid Position:
3UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74
0.57
1.2
72.5
39.7
Major BPS
54.6
0.12
1.5
65.3
41.5
Major PPT
92.4
0.95
0.6
88.1
21.7
Minor 5ss
47.3
-0.3
2.8
68.6
42
Minor BPS
50
-0
1.8
65.48
40.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018309
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035420
13689407 - 13711643
22237
ENSAPLT00000040372
13662771 - 13711643
48873
ENSAPLT00000039479
13667395 - 13711643
44249