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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13721951_13722417_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13721951 - 13722417
Intron Length:
467

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACC|GTACGTCTT
5'SS Class:
major
3'SS Sequence:
TGCTCTCCTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTGAA
U12 Branch Point Sequence:
TCCTCCTGAAGC
Flanking Amino Acid:
KVGSILMHSGPWVGYEQASC
Intron Amino Acid Position:
57

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
61.5
0.27
1.4
64.2
47.3
Major BPS
69.6
0.49
1
59.5
39
Major PPT
79.5
0.66
0.8
73.5
31.5
Minor 5ss
40.9
-1
3.3
63.1
41.5
Minor BPS
58.6
0.25
1.8
66.78
44.8

Associated Gene:

Gene:
CRYBB2
Ensembl Gene ID:
ENSAPLG00000010294
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010727
13721676 - 13723516
1841